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Dear Chris,
I just went through all this, picking out a system for telemetry and habitat mapping of groupers and humphead wrasse in Micronesia.
If you have lots of money to spend, an integrated GPS/GIS receiver would be the way to go. The Trimble GeoXT has submeter accuracy, runs ArcPad in Windows CE, and integrates nicely with all ArcGIS products. You can use it with Trimble's beacon-on-a-belt differential. The system costs around US$6500 and is the one I finally chose. I haven't bought it yet, though I did get the chance to try out a colleague's unit, and I was impressed
There is also the Trimble Pathfinder Pro XS, which I believe has 27.5 cm accuracy but is very expensive (US $11,000).
If you're looking for something cheaper, I've used some Garmin and Magellan systems that cost around US$500-750 and do an OK job, but even with a differential, you're not going to get submeter accuracy (more like 3-5 meters, based on my experience).
I would suggest checking the manufacturer's web pages for something that suits your needs, and going from there.
Hope this helps,
Mark Tupper
Dr. Mark H Tupper, Assistant Professor University of Guam Marine Laboratory UOG Station, Mangilao, Guam 96923 tel. 671-735-2185; fax 671-734-6767 http://www.uog.edu/marinelab/tupper/index.html
Coordinator, Marine Protected Areas Research Group http://www.uog.edu/marinelab/mpa/mparg.html
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